QUOTE(dcwaites @ Feb 12 2008, 10:09 PM) [snapback]512446[/snapback]
Also some older inks have nasty volatiles like phenol. You really don't want to open the microwave and get a lungful of hot phenol gas.
I'm rambling to cover up the fact that I have no idea what would happen.
I would have no idea what would happen either, though I'm usually willing to try most things once. That said, given how accident prone I can be, this is the one thing I probably would not try -- especially now after I read "lungful of hot phenol gas."
That may sound intriguing (and even a bit sexy if you repeat it in a whisper a few times to yourself) -- but I'm not inclined to risk the innards of my microwave (I quite like it) or the possibly of harming my lungs (I quite like that as well) whatever else might happen. But I would watch (with much anticipation) a YouTube video of someone trying this (hint, hint).

I've heard that some members here have "heated" inks on a coffee maker hot plate. This intrigues me enough to try it myself, but I haven't done it yet. The purpose of doing so, however, is not to kill microorganisms but to evaporate some of the water off, making the colour more intense.
If you happen to find any microorganisms in your bottle of ink, I believe it's best to just chuck it. Bottles of ink are relatively cheap enough that I figure I won't risk a pen growing mold because of it. Hope that helps.